Bioinformatics team in microbial genomics and metabolism at Genoscope. Developer of the MicroScope platform (https://xitter.cf/t.co/HMWhiCNiYY)
Evry, France
Joined January 2016
- Tweets385
- Following88
- Followers272
- Likes209
LABGeM @genolabgem.bsky.social retweeted
📢🧬After 23 months of research, our #BlueRemediomics consortium came together virtually for our 4th consortium meeting today discussing some of the project's main achievements & plans for the upcoming months. Thanks to all partners for the ongoing effort!
LABGeM @genolabgem.bsky.social retweeted
The registration form for attending the MIGGS symposium is now open at the following link:
miggs.mathnum.inrae.fr/inscr…
Thank you to all the authors for their contributions, which have helped us create this great program.
LABGeM @genolabgem.bsky.social retweeted
📢 Pour le projet ABRomics, l'
@IFB_Bioinfo et l' @institutpasteur
recrutent un #postdoctorant pour le développement d'une méthode méta-pangénomique pour le suivi de l' #antibioresistance ! emploi.cnrs.fr/Offres/CDD/UA…
ALT ©Institut Pasteur - https://www.abromics.fr/
LABGeM @genolabgem.bsky.social retweeted
Recruitment of a post-doctoral researcher in metapangenomics as part of the ABRomics project at @GenoLabgem in collaboration with @INRAE_MaIAGE (me) and @MgpsLab.
This quoted post is unavailable.
LABGeM @genolabgem.bsky.social retweeted
La méthode sera basée sur des graphes de pangénomes #PPanGGOLiN dévloppé au @GenoLabgem github.com/labgem/ppanggolin
LABGeM @genolabgem.bsky.social retweeted
@GUILLAUMEGAUTRE and @j_main_guy are waiting for you at poster 108 at @jobim2024 (Tuesday, June 25, from 5:45 to 6:45 p.m.) to talk about « PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomes ».
@GenoLabgem @CEA_Jacob_ @GenoUMR_GM
LABGeM @genolabgem.bsky.social retweeted
Alexandra Calteau HDR defence today. Presenting her work on the MicroScope platform and pangenome methods #PPanGGOLiN @GenoLabgem @GenoUMR_GM @CEA_Jacob_
LABGeM @genolabgem.bsky.social retweeted
Congrats @jpjarnoux. Big thanks to @Genopole for organizing the D4GEN hackathon that laid the groundwork for the collaboration (@jpjarnoux @ang3ela Alexandra Calteau @sdumbrav and me) leading to this talk.
LABGeM @genolabgem.bsky.social retweeted
Proud to have presented my work on Integrating complex pangenome graphs at SEAGRAPH at ICDE 2024! It was a great opportunity to collaborate with experts in the field of graph databases !
@GenoLabgem @GenoUMR_GM
@CEA_Jacob_
#SEAGRAPH #ICDE2024 #pangenomic
LABGeM @genolabgem.bsky.social retweeted
🌊 Exciting Update! 🌟
Thrilled to be at the SeaGraph workshop at ICDE 2024 conference in Utrecht today, presenting our work on "Integrating complex pangenome graphs"! 🚀📊
@sdumbrav @GUILLAUMEGAUTRE
@GenoLabgem @GenoUMR_GM @CEA_Jacob_
#SeaGraphWorkshop #ICDE2024 #pangenomic
LABGeM @genolabgem.bsky.social retweeted
Pleased to share my work in front of other PhD students 🎓
#pangenomic #bacteria #comparativegenomics
Today @jpjarnoux is presenting his developments for comparative pangenomics at doctoral school SDSV @UnivParisSaclay @GenoUMR_GM
LABGeM @genolabgem.bsky.social retweeted
2/2 Le projet #MODAMDH a pour but d’identifier dans la Nature des enzymes capables de remplacer à terme certains procédés industriels utilisant des produits chimiques polluants et coûteux, en combinant #bioinformatique & exploration de la #biodiversité . ℹ️youtu.be/KOU4pRxS9Wc
LABGeM @genolabgem.bsky.social retweeted
1/2 [📺🎥#àvoir] Nouvel épisode de la série documentaire #Fondamental sur les solutions développées au #CEA pour répondre aux défis énergétiques & climatiques.
💻Focus sur le projet #MODAMDH avec Eddy Elisée, bio-informaticien au @GenoLabgem à 00:07:35.👇
Nouvel épisode de #Fondamental ce mercredi 24 avril à 21h10. 🤓🍿
À la rencontre des scientifiques du @CEA_Officiel qui, face au changement climatique ou à la pollution, imaginent de nouvelles solutions plus respectueuses de l'environnement...
--> lespritsorcier.tv
LABGeM @genolabgem.bsky.social retweeted
I'd also like to acknowledge @vallenet, @axbazin, @jpjarnoux, Alexandra Calteau, and @j_main_guy for their incredible dedication to the development of PPanGGOLiN. I mostly worked on PPanGGOLiN when I was part of the @GenoLabgem team with them.
LABGeM @genolabgem.bsky.social retweeted
[#prix #scienceouverte] Retour sur la 2e éd. des Prix Science ouverte logiciel libre du @sup_recherche qui a eu lieu en novembre dernier.
Le logiciel #PPanGGOLin , développé par @GenoLabgem , a reçu le prix espoir catégorie "Scientifique & technique".
👉jacob.cea.fr/drf/ifrancoisja…
LABGeM @genolabgem.bsky.social retweeted
If you would like to contribute to the development of PPanGGOLiN as an engineer, post-doc or PhD student contact me by DM. Several positions will be open shortly @GenoLabgem
LABGeM @genolabgem.bsky.social retweeted
All of this work was achieved by @j_main_guy, @jpjarnoux , @GUILLAUMEGAUTRE, @vallenet , twitterless Alexandra Calteau @GenoLabgem and myself
LABGeM @genolabgem.bsky.social retweeted
It also introduces methods to use PPanGGOLiN pangenome as "references" to annotate your genomes, to compare regions of genomic plasticity together to study within-species HGT, along with new output file formats to integrate better with other bioinformatics tools!
LABGeM @genolabgem.bsky.social retweeted
After a year of development, PPanGGOLiN 2.0.0 is now out in the wild !! github.com/labgem/PPanGGOLiN…
Its major new features include a way to integrate any annotation from any tool in the graph, an improved data structure to store your pangenomes, and a brand new documentation !
