GenePattern needs your help! We are preparing a grant proposal for the sustainment of GenePattern server & GenePattern Notebooks. An email from you will help underscore their impact when the grant is reviewed. See our post at: bit.ly/gp-needs-your-help

g2nb: Genomics to Notebook! A new platform that combines the accessibility and research narrative capabilities of @ProjectJupyter with the genomics tools available in @galaxyproject, @igvteam, @cytoscape, and GenePattern. youtu.be/40YEVyJnGAc #nciitcr #bioinformatics

GenePattern and @GSEA_MSigDB in @Nature! GREM1 is required to maintain cellular heterogeneity in pancreatic cancer. Lan et al. 2022. Nature. doi.org/10.1038/s41586-022-0… #nciitcr #bioinformatics

GenePattern in @NatureComms! Multi-omics analysis defines highly refractory RAS burdened immature subgroup of infant acute lymphoblastic leukemia. Isobe et al. 2022. Nature Communications. doi.org/10.1038/s41467-022-3… #nciitcr #bioinformatics

GenePattern and @GSEA_MSigDB in @Nature! Truncated FGFR2 is a clinically actionable oncogene in multiple cancers. Zingg et al. 2022. Nature. doi.org/10.1038/s41586-022-0… @jjonkers2 #nciitcr #bioinformatics

scVelo is now available in GenePattern! RNA velocity analysis of single-cell transcriptomics with scVelo from the Theis Lab @fabian_theis. bit.ly/GPscVelo. notebook.genepattern.org/hub… #Bioinformatics #nciitcr #RNAvelocity

GenePattern and @GSEA_MSigDB in @NatureComms! Human pancreatic microenvironment promotes β-cell differentiation via non-canonical WNT5A/JNK and BMP signaling. Chmielowiec et al. 2022. Nature Communications. doi.org/10.1038/s41467-022-2… #nciitcr #bioinformatics

GenePattern and @getz_lab tools GISTIC & MutSigCV in @IntJCanc: The landscape of genetic aberrations in myxofibrosarcoma. doi.org/10.1002/ijc.34051 #nciitcr #bioinformatics

GenePattern, @GSEA_MSigDB in CSBJ! Evaluation of stromal cell infiltration in the tumor microenvironment enable prediction of treatment sensitivity and prognosis in colon cancer. doi.org/10.1016/j.csbj.2022.… #nciitcr #bioinformatics

GenePattern, @GSEA_MSigDB, and @igvteam in @NatureComms! Splicing is an alternate oncogenic pathway activation mechanism in glioma. Siddaway et al. 2022. Nature Communications. doi.org/10.1038/s41467-022-2… #nciitcr #bioinformatics