@GeneNetwork2
Account based inNetherlands
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GeneNetwork is a free FOSS FAIR+ web service for genetics, genomics & EHR data. Precision medicine—Like GTEx but more species, realtime stats. Since Jan 1994!
Memphis, TN
Joined October 2016
- Tweets371
- Following501
- Followers174
- Likes129
Massive overhauls of GeneNetwork databases to improve speed and to prevent table locks during updates and edits. Now using InnoDB: en.wikipedia.org/wiki/InnoDB
Terrific presentations by @flavia_villani & @AndresGuarahino in genetics course at UTHSC on the pangenome draft paper
biorxiv.org/content/10.1101/…
and paper with @erikgarrison and @v_colonna on cross-chromosome recombination in humans. Yes it happens!
biorxiv.org/search/flavia%25…
genenetwork retweeted
New package from our group: MetabolomicsWorkbenchAPI.jl is a Julia package to work with the Metabolomics Workbench REST service. @GeneNetwork2 @OPARProject
New package: MetabolomicsWorkbenchAPI v0.1.0 announced #JuliaLang
Release notes:
> - Initial release version 0.1.0
Registration: github.com/JuliaRegistries/G…
Repository: github.com/senresearch/Metab…
Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:
10years.guix.gnu.org/video/g…
CHALLENGE: How to keep genetic and genomic data unidentifiable but sharable?@erikgarrison @pjotrprins and @RichardMott7)are making progress toward this key challenge in individualized health care.
Pangenomes need protection too! Here is Erik’s latest
privvg.github.io/2022/09/24/…
Several user interface upgrades and addition of icons to GeneNetwork’s main Search page today (25Sep2022).
Thanks to Zach Sloan.
GeneNetwork is working beautifully at Day 1 of @SysGenSchool
More intense use coming soon.
genenetwork retweeted
We develop a method for high-throughput frailty assessment using machine vision is out @NatureAging. We worked with Gary Churchill and @NathanShockCtrs This tech will enable scalable and objective aging studies. Detailed tweet to follow. rdcu.be/cTLJi
Rupert highlighting boolean networks for ageing and metabolism @sysgenschool
He is using Minerva for this work. We will be test driving this week.
genenetwork retweeted
plot your data.
plot your data.
plot your data.
plot your data.
plot your data.
Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
Great Hacker News thread on user interface design and optimization. It hard and a community effort—
news.ycombinator.com/item?id…
Hey GN coding team— to say but correlations are running VERY SLOWLY today, even against BXD phenotypes. What gives? Took 262 seconds. Is one process competing with another?
Worth following Albert Rapp @rappa753 . Code we might use for improved GUIs.
Cool stuff. We should add links to www. genenetwork.org.
Verónica , would love to give you a tour of GeneNetwork at some point by Zoom. Oldest web service in biomedical research. Reach out at [email protected]
Hello everyone, I share with you some networks that I have made in different tools for network analysis. I highly recommend these tools. Greetings.
#Gephi #Gephisto #VosViewer #Cytoscape #Kumu #GraphInsight #NodeXL #orangedatamining #Graphia #Graphistry #SocNetV #Tulip #dataviz
This is where GeneNetwork shines.
As soon as experimentalist stop citing rodent studies based on a single strain of mouse or rat. That is n = 1. About 95% of studies using mouse and rat and Celegans are n = 1. What does that say about robustness of hard-core neuroscience? @DavidAshbrook @KordingLab @IBANGStweets
