@FedeBioinfo

Head of the Bioinformatics Group @ IMBEI@UnimedizinMainz, 🇮🇹 in 🇩🇪, loves 💻🧬🩸☀️🍹🌲🏖️ He/him, 🦋 https://xitter.cf/t.co/4OCgAsuPqI

 Mainz, Germany
federicomarini.github.io
Joined December 2016
  • Tweets2.6K
  • Following923
  • Followers948
357Media
See you on the other side, where the sky is so blue and the air is just much better. bsky.app/profile/federicomar… - get/stay in touch!
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Stephen Turner@strnr29 Oct 2025
Insights, opportunities, and challenges provided by large cell atlases genomebiology.biomedcentral.… 🧬🖥️🧪
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Sumeet Pal Singh@sumeetpalsingh86 Jun 2025
🚨 Just out in Nature Communications: Cholangiocytes contribute to hepatocyte regeneration after partial #liver #injury during growth in #zebrafish We challenge old assumptions on liver regeneration! 🔗 nature.com/articles/s41467-0… 🧵(1/8)

Cholangiocytes contribute to hepatocyte regeneration after partial liver injury during growth spurt...

Nature Communications - During partial liver injury in growing zebrafish, cholangiocytes regenerate hepatocytes through transdifferentiation, revealing a stage-specific regeneration mechanism...

nature.com
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Francesca Finotello@Francesca_Fin_20 Jun 2024
📢New preprint alert: #Benchmarking second-generation methods for cell-type #deconvolution of #transcriptomic data doi.org/10.1101/2024.06.10.5… A thread 🧵👇 1/
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Jack Raines
@Jack_Raines21 Nov 2023
🚨OpenAI drama, except it's the Game of Thrones cast🚨 Born on the east side of a large sea? Yep. Speaks multiple languages? Yep. Could be played by Emilia Clarke on television? Yep.
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Clement Lee, MD, MSc@ClementLeeMD18 Nov 2023
Travis Kelce’s resurfaced tweets as medical subspecialties: A thread 🧵.
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It is just a lot of fun to work with this group. Thanks @K_Imkeller @Jonas__Schuck & Ahmad! Keep checking our progress at github.com/AGImkeller/Single… to efficiently implement this idea!

GitHub - AGImkeller/SingleCellAlleleExperiment: implementation of a single cell allele experiment...

implementation of a single cell allele experiment object - AGImkeller/SingleCellAlleleExperiment

github.com
Katharina Imkeller@K_Imkeller16 Nov 2023
Presenting latest results from our immunogenetic diversity project. Frankfurt-Mainz research team at the CZI @cziscience annual single-cell meeting in Carlsbad. @FCI_health @FedeBioinfo
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Really hard to tell, this meeting simply had it all. I will go with the interactions with many new and familiar faces, and the much time spent together, from sunsets till chilly evenings! I feel grateful and lucky to be a part of this whole ❤️
biohub
@biohub16 Nov 2023
This week, our #SingleCell biology grantees gathered to share their research, connect with other research groups + discuss how they can use new data & technologies to understand health & disease. Attendees, what was your favorite part of the meeting?
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Ciao ciao beautiful California, it has been a pleasure again to be there. I have enjoyed every single moment of the CZI @cziscience annual meeting, (re)connecting with amazing clever people, sparkling new ideas, and fantastic food experiences!
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It's been a pleasure to see this getting realized, and experiencing how Ramon became addicted to well-crafted package development has been the cherry on top 💪 #proudBiocMentor
Ramon Massoni Badosa@rmassonix26 Oct 2023
The Tonsil Atlas 2.0 is now available through my first BioConductor package: HCATonsilData! bioconductor.org/packages/re… In the revision , we have included 7 additional donors (adults), doubled the number of cells, and validated annotations. Here's how you can access all datasets👇
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I would only add MDPI and their hundreds of special issues. Of course, the Nazgûls…
Guido Meijer@guido_meijer15 Jul 2023
I was watching Lord of the Rings last night and realized there are many parallels with academia! A thread 🧵👇
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Had this in a presentation some years ago (EuroBioc in Munich?) as an ode to interoperability 😬 #bioc2023 #biocmeme
Bioconductor@Bioconductor11 Jul 2023
Bioconductor Meme Contest Get involved by creating a meme to do with Bioconductor, Share it on Twitter/Mastodon and tag @bioconductor!! Make sure to add #bioc2023 and #biocmeme to your post and drop the URL in our #bioc2023 Slack channel: buff.ly/3pJgjqX
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... and two quick shameless plugs for our iSEE package #bioc2023 #biocmeme
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It has been a big pleasure and opportunity to learn from many of the people involved in this initiative 🙏! Want to get more out of your RNA-seq data and understand what goes on at the APA layer 🧬? Have a look at the preprint 📜 biorxiv.org/content/10.1101/…

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq...

The tremendous rate with which data is generated and analysis methods emerge makes it increasingly difficult to keep track of their domain of applicability, assumptions, and limitations and consequ...

biorxiv.org
Yoseph Barash@YosephBarash29 Jun 2023
📢 Paper alert! Are you interested in #RNA Alternative Polyadenlyation (APA)? Maybe you quantify APA from RNA-Seq? But there are so many methods for that - which method should you be using?? 🤔…1/n
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Yoseph Barash@YosephBarash29 Jun 2023
📢 Paper alert! Are you interested in #RNA Alternative Polyadenlyation (APA)? Maybe you quantify APA from RNA-Seq? But there are so many methods for that - which method should you be using?? 🤔…1/n
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Tom Knowles@tkbeynon11 May 2023
There’s this guy on TikTok who does nursery rhymes in the style of his favourite bands and the production standards are insane. This Mumford and Sons style rendition of You Are My Sunshine is genuinely as good as a song they would release
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My first smorgasbord as a teacher, and it could not be something other than a #biocsmorgasbord! Have fun with iSEE, and reach out to learn more in the coming weeks!
Bioconductor@Bioconductor10 May 2023
🎓 Upcoming #biocsmorgasbord! Learn "Interactive visualization of SummarizedExperiment objects with iSEE" 🧬💻 with @CSoneson, @KevinRUE67, @FedeBioinfo 📅 May 22-26 ➡️ buff.ly/41iwsjZ #Bioinformatics #rstats
Screenshot of Interactive visualization of SummarizedExperiment objects with iSEE tutorial

ALT Screenshot of Interactive visualization of SummarizedExperiment objects with iSEE tutorial

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Federico Marini 🦋@federicomarini.bsky.social retweeted
Bioconductor@Bioconductor26 Apr 2023
Bioconductor Release 3.17 is now available. See full release announcement at bioconductor.org/news/bioc_3… @Rstats @Bioconductor
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Federico Marini 🦋@federicomarini.bsky.social retweeted
Bioconductor@Bioconductor26 Apr 2023
🎉 Exciting news! Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023! 🎓Embark on a free, self-paced, learning journey with Galaxy RStudio! ❓Get help from instructors on Slack Register now & join the fun! ➡️ gallantries.github.io/video-…… #biocsmorgasbord
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Ok, I am quite flattered now... Who is your Twitter twin? 👯 @FedeBioinfo = @wolfgangkhuber FedeBioinfo and wolfgangkhuber are Twitter twins! #twitterTwin #toasteed toasteed.com/dk4mr1/pmjqir1h
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