
Closing the loop in biology. Currently @FlagshipPioneer. Co-founder @LilaSciences. Manifesto: https://xitter.cf/t.co/nxm4usQGlQ
Joined July 2020
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Replying to @FealaJake
9/Here's a manifesto exploring these ideas—feedback loops, Eroom's Law, AI-guided optimization, and what it means for the future of biotech.
If this resonates, I'd love to hear from you.
Yup, “competence without comprehension” (Dan Dennett’s term) is the rule, not the exception, in almost every real-world endeavor.
So it’s best to get good at a thing by trial and error first, before trying to understand it.
Replying to @cremieuxrecueil
mechanism first thinking feels rigorous and it’s actually backwards
we usually find the mechanism by having a drug that works and asking why
aspirin to COX took about 70 years, remember?
Jake Feala retweeted
From clinical trials to personalized therapeutic engineering
The clinical trial apparatus is very obviously not working for patients:
Complicated, Kakfa-esque inclusion and exclusion criteria.
Minimal combination opportunities.
Randomization to arms that made sense when the trial started, but not anymore.
Years from trial start to readout.
Getting on a trial is like walking a tightrope where any one of ten things can immediately disqualify you.
Luckily, the successor (personalized therapeutics engineering) is rising. Find what's attackable and unique in a tumor, and engineer a therapy or set of therapies to attack it.
This paradigm is still very small. But it's growing, and at maturity, it will supplant trials.
The beauty is that where trials are "a million reasons to say no," therapeutics engineering is "one reason to say yes." Take whatever information you have on the tumor, and develop therapeutics that target that set of things.
Very early days, but I expect this to be mainstream a few years from now.
Still a lot to build and figure out, but this transition will be fantastic for patients with tough cases.
Jake Feala retweeted
Hugely frustrating fact about cancer:
The best centers (Sloan Kettering, Stanford, UCSF, etc) typically run patients through in-house genomic diagnostics that are incredibly limited (small gene panel; no RNAseq).
So many of our cases are folks who've had MSK-IMPACT or Stanford STAMP and UCSF 500 that missed obvious things. They're well behind Caris and Tempus, and miles behind Valius.
They're at the cutting edge of everything else; very sad that they're so behind here.
Great list! I’d expect #8 to be solved first - very amenable to high-throughput assays and closed-loop optimization with existing (sequence-based) protein design models
In light of the progress in mathematics, we at Edison Scientific and FutureHouse have assembled a set of Millennium Problems for Biology. They are chosen to be very hard to solve but very easy to validate in a simple laboratory environment. Any of these, if solved, would mark a major advance in biotechnology, and most of them would contribute materially towards curing disease. These are, in some sense, the “last reasonable eval” for AI in biology. This was work primarily by @MichaelaThinks and myself, with contributions from many others.
Short descriptions below. The full descriptions of the problems with acceptance criteria are at the Bio Millennium Problems website, linked in the next post. Share more if you have ideas. If they meet our criteria, we’ll add them to our list (with attribution and permission).
Jake Feala retweeted
In light of the progress in mathematics, we at Edison Scientific and FutureHouse have assembled a set of Millennium Problems for Biology. They are chosen to be very hard to solve but very easy to validate in a simple laboratory environment. Any of these, if solved, would mark a major advance in biotechnology, and most of them would contribute materially towards curing disease. These are, in some sense, the “last reasonable eval” for AI in biology. This was work primarily by @MichaelaThinks and myself, with contributions from many others.
Short descriptions below. The full descriptions of the problems with acceptance criteria are at the Bio Millennium Problems website, linked in the next post. Share more if you have ideas. If they meet our criteria, we’ll add them to our list (with attribution and permission).
I'm a cancer genomics expert and I want to analyze sequencing data from my friend's cancer, in my spare time and with my personal account.
Will I be granted access? Will report back with the answer.
Today we’re opening applications for the Life Sciences Verification Program.
Through the LSVP, life science professionals can use our models—including, for the first time, Mythos—with a new set of safeguards designed to enable the full range of biology-related work. We designed these new safeguards to provide a better experience for biologists and more protection from risk of misuse.
The program is launching in beta for teams of all kinds—from academic labs to startups, pharma companies, and more. We will continue to improve the program and expand access to individual Pro and Max plans over time.
Learn more about these access grants and apply: anthropic.com/news/life-scie…
Human cells badly want to form tissues, can't in the typical, open-loop lab approaches of fixed recipes and delayed readouts. Polyphron closes the loop to give cells the nudges they need, in real time, to reach their goal.
Huge congrats on the raise!
Today we’re announcing we’ve raised $20M in seed financing led by @QuietCapital , with participation from @GradientVC , @haystackvc and @CompoundVC and other amazing folks to build the verification layer for AI-driven biology.
We are also delighted to be welcoming @vqctran who is joining us from @GoogleDeepMind as a co-founder.
AI is not going to cure all diseases without a verification substrate - a scalable environment where models can test predictions and learn against living human biology.
AI is becoming increasingly capable of generating biological hypotheses, therapeutic candidates and experimental designs. But generating ideas is advancing much faster than our ability to test what those ideas will actually do in human biology. Existing systems force a tradeoff: the most biologically relevant approaches are slow and expensive, while faster in vitro and computational systems often lack the fidelity needed to capture human response.
Polyphron’s bet is that tissue is the fastest, cheapest, most parallelizable verification substrate that still contains the biology that matters and we believe the path to biological superintelligence runs through closed-loop interaction with these living and simulated human systems.
Thank you to @axios for covering the announcement.
Link to our new website in the thread.
Jake Feala retweeted
Actually, even stronger than this: while people are worrying about theoretical engineered pandemics, more than 1% of the population is already dying every year to disease and old age. Safety is important, but accelerating medicine is the best way to save human lives.
Jake Feala retweeted
I’ve expected this for a while but it still hurts. The “Life Sciences Verification Program.” It breaks my heart to know that biological knowledge will be locked down and gatekept like this. I want to take a moment to mourn, because I believe this marks an end for open science as I knew it.
I think back to my education. I owe so much to the open-access literature. I'm so deeply thankful to the culture of transparency among scientists. All the free knowledge I've been given. The free GenBank sequences. The free PDB structures. The education and know-show that my colleagues shared with me for the pure love of learning.
The Life Sciences Verification Program will kill that spirit. The most important biology tools of the next decade will be locked down and controlled. Some fragments of the old literature will remain free, but the real heart of where science happens will not be free. Frontier knowledge will belong only to people who the authorities decide deserve it.
I want to fight this, but I don’t think I can. I don’t believe bioterrorism is a serious threat, but convincing people of that is not realistic. The fear is embedded too deep in the psyche. If I tried, there are armies of internet trolls eager to accuse me of evil things. It would become my entire online life.
There is a growing and well funded fear-industrial complex dedicated to the idea that Bio-AI is a terrible risk and the people who practice it need to be monitored and policed. Hundreds of full-time professionals whose salary depends on their belief that biology presents a dire threat. What hope do I have of arguing with them?
On the other side, the traditional defenders of free information are historically weak. Biology professors are struggling just to keep the lights on. The last thing they want is to be called reckless enemies of national security. They aren’t going to fight this - I’m sure many of them are already signing up to ask for permission to be on the list.
So I’m writing this to bear witness. This is how it ended. Biology isn’t going to be free going forward. That was an idea of the pre-AI era and it is over now. The fight now isn’t over free access to information. It’s over who gets verified access to the closed information.
Big pharma companies get permission, of course. So do professors at elite universities. But we can petition Anthropic to expand that list. Maybe they might allow access for high school teachers, medical students and nurses? I hope they will approve farmers, iGEM teams, community biolabs, birdwatchers, park rangers and community gardens.
Will Anthropic allow those people to study biology at the frontier? As of today, the power officially belongs to them. We can only ask.
Today we’re opening applications for the Life Sciences Verification Program.
Through the LSVP, life science professionals can use our models—including, for the first time, Mythos—with a new set of safeguards designed to enable the full range of biology-related work. We designed these new safeguards to provide a better experience for biologists and more protection from risk of misuse.
The program is launching in beta for teams of all kinds—from academic labs to startups, pharma companies, and more. We will continue to improve the program and expand access to individual Pro and Max plans over time.
Learn more about these access grants and apply: anthropic.com/news/life-scie…
Jake Feala retweeted
In sum, when you actually know something about building a laboratory, lab automation, and what goes into synthesizing a virus and testing its properties, it becomes clear that AI does not impact this very much.
At best, it provides bad actors with a quicker way than the internet to learn about the stuff I described (which machines, which lab protocols, etc.). But it does nothing to impact procurement timelines, existing industry safeguards and regulations on procurement for lab facilities, the ~$100M cost (plus high operating expenses), the physical limits on experimentation velocity, or the fundamental knowledge gaps in virology that cannot be solved merely by 'smarter' AI without iteration in the physical world.
Jake Feala retweeted
I am very glad Kate understands the problem and does not engage in a common fallacy in some AI circles: that AI will just "magically" cure cancer.
And even when the clinical trial barrier is understood in these circles, it is often viewed as simply a barrier at the end, in validating drugs. But my point is that slow clinical trials, especially early stage ones, break an important feedback loop of learning. They make the AI systems inherently worse at coming up with good ways to treat cancers!
Why?
Because AI is immensely powerful, but it needs the right data. And the best data remains in-human data (and I think it will remain so for more a reasonable amount of time).
We can profile humans at very high resolution now, after being treated, with advanced techniques, like single-cell RNA sequencing. This is what @sytses is doing to himself, with great success (and also working on translating to others).
AI is supercharged by this type of rich information! But it does need to get this information!
And we are so, so far behind in terms of not just starting trials, but also integrating this high precision profiling in medical care. Pierce Ogden, who is featured in my article, explained how he had to *fight* with the hospital to get standard bulk RNA sequencing (so not single cell) done on his father's tumour and use his connections to do so. The hospital was doing a much more restrictive, so-called panel based analysis, which missed the protein his father's tumour was enriched in!
There is no single regulation that leads to this, but the emergent system is so sclerotic and risk-averse that anything new takes a long time to be integrated.
“Everyone tried their best, but the system is so convoluted and risk-averse.”
That sentence should terrify anyone who cares about AI’s potential in biology.
America still leads in basic science. But we’re rapidly falling behind in turning it into drugs that save lives. In the age of AI, scientific progress depends on real-world experiments. Lose that feedback loop, and we lose our lead in *both* science *and* drug development.
A must-read from @RuxandraTeslo.
nytimes.com/2026/09/04/opini…
The only data that matters is from humans. Also something that is rarely discussed is the problem of industry and regulators treating human trials as binary outcomes. Consider how many failed rocket attempts were required for success. It is hard to actually learn from trials, they are effectively pass-fail, you have 3 shots on goal under severe time pressure and regulatory headwinds.
“Everyone tried their best, but the system is so convoluted and risk-averse.”
That sentence should terrify anyone who cares about AI’s potential in biology.
America still leads in basic science. But we’re rapidly falling behind in turning it into drugs that save lives. In the age of AI, scientific progress depends on real-world experiments. Lose that feedback loop, and we lose our lead in *both* science *and* drug development.
A must-read from @RuxandraTeslo.
nytimes.com/2026/09/04/opini…
Jake Feala retweeted
We are on the cusp of a wave of new therapies for some of the worst diseases. But the world won’t benefit unless the US fixes its drug regulatory system. My new essay for @nytimes, on how slow clinical trials are now the biggest obstacle to curing cancer.
nytimes.com/2026/09/04/opini…
- I interviewed dozens of researchers, especially oncologists at leading U.S. centers. A striking consensus emerged: science is no longer the main bottleneck to new cancer drugs. It is our ability to test discoveries in patients through clinical trials.
- The cost of starting a Phase 1 trial in America has roughly doubled over the past decade. As a result, companies increasingly take early trials abroad: Australia’s Phase 1 trial volume has nearly doubled in a decade, driven mainly by U.S. companies.
- Unfortunately, the underlying incentives are badly asymmetric: Institutions can be blamed for harms caused by moving too fast, but almost no one is blamed when patients deteriorate during avoidable delays. One doctor called the emerging system “ritualized safety over actual risk assessment.” Or as, @DavidHongMD put it: "We often forget that the biggest risk is the cancer itself."
- This problem is becoming more urgent because medicine itself is changing. Sequencing, biological engineering and A.I. make increasingly personalized therapies possible. But our regulatory system was mostly built for standardized drugs tested in large populations.
- @sytse, the co-founder of GitLab, shows what personalized medicine can achieve: after relapsed osteosarcoma and being told there were no options left, he pursued a highly individualized approach and has now been cancer-free for a year. But doing so required extraordinary resources and regulatory expertise.
- Pierce Ogden’s father was less lucky. After molecular analysis identified a drug that might target his glioblastoma, the manufacturer agreed to provide it. But administrative barriers delayed access until it was too late. “My dad was ready to try anything,” Pierce told me. “But the system is paternalistic.”
- The A.I. revolution is making this bottleneck more important, not less. A.I. relies on relevant data. Information from early-stage trials could compound with A.I. tools to achieve truly revolutionary medicines. Without the data, this is far less likely to happen.
- Another important shift is that innovation increasingly comes from academic labs and small biotech companies rather than Big Pharma. These small companies find it far harder to unable to absorb delays and regulatory barriers.
- Apart from cancer, China is the biggest winner from America's outdated medical regulations. China has a much faster trial system, with testing often starting a full year earlier. This allows Chinese pharmaceutical companies to experiment and improve medicines while American companies play with mice. Today, half of all drugs licensed by major pharmaceutical companies originate there, up from less than 5 percent only a decade ago.
- But we don't need to copy China. The best model is Australia: lots of on-site scientific and ethics reviews, and requirements that are proportionate to small, early-stage trials. Phase 1 studies there begin roughly 6–12 months faster, without any notable increases in adverse safety events.
- Operation TrialBlazer, a 2026 HHS initiative is a good start in this direction, but we need legislative action by Congress to truly make Phase I trials faster and more efficient!
I want to thank everyone who helped me with this article: everyone I interviewed and the amazing editors at the Times. This is the result of a months long journey of extensive interviews and research.
Special thanks go to those who came on the record. One of the features of the system is an atmosphere of fear, where practitioners are afraid to publicly come out and explain these issues. So anyone who does is a hero in my book!




















