Bioinformatics Research Associate in genomics, protein sequences and structure.
Toronto, Canada
Joined June 2013
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David Curran retweeted
Ok this is how MINDBLOWINGLY effective these vaccines are in Ontario. Cases/Hosp/Deaths in Partial Vax (Blue), Full Vax (orange), Non Vax (grey) amongst first 3.5 million doses.
I'm more confident now than ever life will get back to normal soon. People just need to get 💉💪
David Curran retweeted
Starting today, @genome_gov is hosting a Machine Learning in Genomics virtual workshop. This is an exciting opportunity to hear about the opportunities, challenges, and ethics associated with applying machine learning methods to genomics. Watch it here: youtube.com/watch?v=qrU1zuMh…
@EvolGenomology Sure. I ran meme on protein seqs, with nmotifs 15, and minsites about 65% of the number of seqs.
@EvolGenomology @jdwasmuth Problem is would have to be enough sequence to contain a few motifs in the correct sequence to detect any signal.
@EvolGenomology @jdwasmuth I haven't. Figmop was designed for longer sequences than the gene, but could work. Might be high false positives.
@EvolGenomology @jdwasmuth No problem. Im putting together a detailed usage guide, so let me know if things are difficult to use/understand.
@EvolGenomology @jdwasmuth Just tried it, and the setup.py file is missing via method. I'll look into it. Should work with the release DL.
@EvolGenomology @jdwasmuth How are you getting the files? Both patternHmm (requisite) and figmop have a compressed release file to download.