Computational Cancer simulator. Opto-Knowledge Systems, Inc. Working on @MultiCellDS, PhysiCell, and BioFVM.

Los Angeles, CA
Joined June 2015
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I participate in the UChicago Scavenger Hunt annually. In lieu of an on campus blood drive, there's an at home FLOPS drive: Donate cycles on your PC for COVID-19 (no supercomputers or clusters allowed). Help us win by running folding@home for my team, @gashscav, team ID 265387.
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I started today a new job at @IntellisenseInc as Research Scientist in Computer Vision and I'm excited about it!
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Awesome and busy day so far discussing @NIH_CommonFund #HuBMAP. Heard @NIHDirector talk to us about how single cell analysis is the next big thing in bio. @ngehlenborg @satijalab @GriffinMWeber @rheiland & @JCSilverstein have provided great insight!
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I'm attending @combine_coord and have heard great talks by @dr_drae about metabolomics and @kieranjalden about confidence in evidence. I'm talking with @GolebiewskiM about multicellular models and hope to talk shortly with @andreshouse about medical data formats. #combine2018 – at Boston, MA
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I'm thrilled to working on this project! At @combine_coord today to discuss implications of this with data models and standards. – at Boston, MA
When I was a kid, I loved drawing maps. I'm so thrilled I get to work on the HuBMAP to create a biomolecular map of the human body, with the @NIH and the @NIH_CommonFund. Working with @katycns and @CompCancer to create a coordinate system to navigate this new map! @MultiCellDS
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My company, Opto-Knowledge Systems, Inc. (OKSI) in LA is hiring! We want Bachelor's, Master's, and PhD level candidates who like data science, machine learning, or software/electrical engineering. We love physicists. US Citizens only; must be able to obtain Secret clearance.
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Last talks of #MechBio2018 are (finally) rally about multicellular systems: Bacteria! First up is Bo Li (UCSD) talking about growing bacterial colonies! – at Irvine, CA
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Listening to @mace_em talk about natural killer (NK) cell differentiation at #MechBio2018 – at Irvine, CA
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.@MathCancer The hair! What wild days you had in graduate school....
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Finally! That review process took a while.... – at Los Angeles, CA
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Good point. What I'm trying to avoid is having to list Cell Type A interacts with Cell Type B because there are so many different types of cells. If you can break it down into HOW that signal gets transmitted, then I think it will be easier to organize. – at Long Beach, CA
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We have two cases: a cell interacting with some quantity in the microenvironment and also directly to a cell because they are attached and interact through some interface/junction. I'd rather see cell A has interface type B that works then with cell C in method D. – at Long Beach, CA
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Thank you to Max Neal for getting this annotation paper done! Thanks also to my fellow co-authors @dagmarwaltemath @dr_drae @konigmatt @andreshouse @GokselMisirli @atalagk @SharCrook @agarny @GolebiewskiM @mhucka @lenovere @Brett_Olivier @HerbertSauro @binfalse @olafwolkenhauer nitter.cf/biorxivpreprint/status…
Harmonizing semantic annotations for computational models in biology biorxiv.org/cgi/content/shor… #bioRxiv
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I suspect that the #BioFVM part as currently written will work well for GPUs. I'm also very curious about the #PhysiCell part.
Last talk that I can attend today: C. Anthony Hunt (@ucsfpharmacy ) is talking about using agent-based models to represent how livers get damaged from acetaminophen and will soon talk about the in vitro-in vivo disconnect. #MSMUCR2017
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Just heard a great talk from Bill Cannon (@bioPNNL @PNNLab ) about predicting metabolite levels and how that impacts cell phenotypes. I love the entropy and thermodynamics involved. #MSMUCR2017
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Listened to @Nathan_E_Lewis talk about metabolism pathways and creating custom models for different cell lines. Integrate with digital cell lines with @MultiCellDS ? #MSMUCR2017 – at Riverside, CA
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