@CellProfiler

Cell image analysis software

 Cambridge, MA, USA
cellprofiler.org
Joined November 2012
  • Tweets285
  • Following31
  • Followers2.7K
11Media
Hi #microscopy and #bioimageanalysis Twitter! I have a favor to ask :) @COBA_NIH, @BioimagingNA , and @RoyalMicroSoc have released a new+improved 2022 Imaging Analysis survey at forms.gle/1hcJnDVH5V3EPtcy7. We especially want your input if you are very new to image analysis! (1/x)

Bridging Imaging Users to Imaging Analysis - 2022

The purpose of this study is to inform our priorities and collaborative efforts for the Center for Open Bioimage Analysis (COBA), Bioimaging North America (BINA) and the Royal Microscopical society...

docs.google.com
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Images to Knowledge (I2K) 2022 Registration & Poster Submissions are OPEN!!! 📅 Join us virtually May 6 , 9, and 10, 2022 🔗Register here: tinyurl.com/I2K-2022 Submit posters by April 27! 🔗forms.gle/kuWG1t5ASKPmRGuT7 #I2K2022 #OpenSource @COBA_NIH @BioimagingNA
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If you're new to #bioimageanalysis, it is SO difficult to know how to start! My own top 5 resources: 1) forum.image.sc - your one-stop-shop for help with >60 tools (or how to pick one) 2) @BioimagingNA now has searchable educational content nitter.cf/BioimagingNA/status/15… (1/2)
BioImaging North America@BioimagingNA
17 Mar 2022
Replying to @BioimagingNA
Plus we have lots of Training and Education Resources 👩‍🏫 bioimagingnorthamerica.org/t… and Job Openings 🏢 bioimagingnorthamerica.org/j… Which are more searchable 🔎 and user friendly! Contribute your own!

Training & Education Resources

Training and Education resources for microscopists seeking online materials.

bioimagingnorthamerica.org
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Images to Knowledge (I2K) 2022: Talk & Workshop Submissions are Open! 📅 May 6 - 10, 2022 - virtual Submit your talks and/or workshops before March 1st: 🔗forms.gle/DLFFkCeum82MYmAj9 #I2K2022 #OpenSource @BioimagingNA

I2K 2022 'Request to Present' Form

The Images to Knowledge (I2K) 2022 Conference will be held virtually on May 6th, 9th, and 10th, and will focus on using and developing open source image analysis platforms/tools. This form is to be...

docs.google.com
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First, with @DavidRStirling and @DrAnneCarpenter , presenting @CellProfiler Analyst 3! David did an amazing job putting this release together, and I'm so proud of all the things he added and how it came out! arxiv.org/abs/2108.02060 2/3

CellProfiler Analyst 3.0: Accessible data exploration and machine...

Image-based experiments can yield many thousands of individual measurements describing each object of interest, such as cells in microscopy screens. CellProfiler Analyst is a free, open-source...

arxiv.org
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If you missed our last round of hiring for our Postdoctoral Training Program in Bioimage Analysis, you're in luck- a new slot is open! If you're a biologist looking to transition into a career in #bioimageanalysis , we'd love to hear from you. Plz RT! docs.google.com/document/d/1…

Image assay development postdoc job description

Postdoctoral Training Program in Bioimage Analysis Broad Institute of MIT and Harvard, Cambridge, MA Impact the discovery of new disease therapies in the Cimini laboratory at the Imaging Platform...

docs.google.com
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Curious about applying deep learning for difficult bioimage segmentation tasks but don’t know where to start? We wrote a review to help you find user-friendly software for precisely this challenge! Available here (Lucas et al): carpenterlab.broadinstitute.…
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Today we've released CellProfiler Analyst 3.0. Thanks to everyone who contributed, we've added some really cool features! #Microscopy #bioimageanalysis carpenterlab.broadinstitute.…

CellProfiler Analyst 3.0 Release: Accessible data exploration and machine learning for image...

carpenter-singh-lab.broadinstitute.org
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Trying to get started using @CellProfiler from the command line? Check out our blog post here, or head on over to the forum to discuss! #Bioimageanalysis carpenterlab.broadinstitute.… forum.image.sc/t/getting-sta…

Getting started using CellProfiler from the command line

carpenter-singh-lab.broadinstitute.org
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Free online image analysis workshop for beginners! June 24, 2021 This interactive workshop will focus on adapting CellProfiler pipelines to new datasets. Undergrad / early grad students will be prioritized, but all are welcome. Sign up (space limited): broad.io/cellprofilerworksho…

Introduction to image analysis with CellProfiler virtual workshop

Learn to turn bioimages into data using the free, open source software CellProfiler (https://cellprofiler.org/). This interactive virtual workshop will focus on understanding how to adapt CellProfi...

docs.google.com
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This course will be jointly led by Julia van den Beemd and @BoerLab from @TUeindhoven with @nasim_jamali and @pearl_ryder from @broadinstitute with support from @COBA_NIH. Please let us know if you have questions. The sign up closes on May 15, so don’t delay!
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Replying to @CellProfiler
@CellProfiler 4.1 is available now on our website, CellProfiler.org! Full blog post to come later this week. If you want to chat about the new release or anything related to CellProfiler or #BioimageAnalysis , it's @COBA_NIH office hours on Friday- broad.io/imagingofficehours
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Excited about taking on new challenges in machine learning and accelerating the discovery of medicines? Join @DrAnneCarpenter and me at the @broadinstitute, and be part of an amazing community of ML engineers & biologists with this shared goal. Learn more broad.io/mlcbpostdoc

PUBLIC MLCB Postdoctoral Research at Broad Institute current

Postdoctoral position: machine learning for drug discovery Purdue University, West Lafayette, Indiana Discover causes and cures for disease through research in the Carpenter–Shen laboratory! Want to...

docs.google.com
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We're hiring! Are you a microscopist looking to improve your image analysis skills? Do you love helping others and working in teams? Apply to be the 4th member of our Postdoctoral Training Program in Bioimage Analysis. We'd love to have you! Plz RT! docs.google.com/document/d/1…

Image assay development postdoc job description

Postdoctoral Training Program in Bioimage Analysis Broad Institute of MIT and Harvard, Cambridge, MA Impact the discovery of new disease therapies at the Imaging Platform (a.k.a. Carpenter laborato...

docs.google.com
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Don't miss CellProfiler Office Hours (sponsored by @COBA_NIH), next Friday, December 11. Sign up here for a 30-minute slot: broad.io/imagingofficehours

CellProfiler & Piximi Office Hours - October 9, 2026

Come ask us your image analysis questions! The Imaging Platform team at the Broad Institute is hosting bi-weekly virtual/in-person Office Hours where you can sign up for a 30-minute time slot to work...

docs.google.com
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3 DAYS LEFT to apply to learn about @CellProfiler from the amazing team of @nasim_jamali and @pearl_ryder . Don't miss out! – at Medford, MA
This Post is from an account that no longer exists. Learn more
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There is SO MUCH going on with the @CellProfiler / @COBA_NIH team these days, so if you need a brief interruption from the political craziness, please let me tell you all about it! (1/x)
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A new small @CellProfiler bugfix release today- if you've had issues, please give it a try!
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Big news out of the CellProfiler office today!
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.@CellProfiler @COBA_NIH Office Hours are back!(They never actually left, but their promotion is back!). Need a half hour of image analysis help from a CellProfiler expert? Sign up for this Friday at broad.io/imagingofficehours ! Plz feel free to share w/ those you think may benefit.

CellProfiler & Piximi Office Hours - October 9, 2026

Come ask us your image analysis questions! The Imaging Platform team at the Broad Institute is hosting bi-weekly virtual/in-person Office Hours where you can sign up for a 30-minute time slot to work...

docs.google.com
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