@CellMapPT
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interrogating the 3D architecture and subcellular structures of cells in tissues
Joined June 2022
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🚨 Exciting update for the CellMap Segmentation Challenge! 🚀Launch is now slated for early November 2024! Learn more about the new timeline and what’s ahead here👉mailchi.mp/janelia.hhmi.org/…
We’re thrilled to announce the launch of the CellMap Segmentation Challenge set to go live at the end of October 2024!
Sign up for email announcements and be the first to know when the challenge officially launches: cellmapchallenge.janelia.org
⭐ Join the CellMap Segmentation Challenge! ⭐
Compete to create the next, best #AI-driven image segmentation model using hundreds of our meticulously annotated high-resolution EM images as training data.
Competition starts end of Oct. Sign up today ➡️ cellmapchallenge.janelia.org…
🚨 Exciting news! 🚨
Check out this data release of 7⃣ FIB-SEM and segmentation volumes from a single P7 mouse as a preprint on bioRxiv 🐁🎉
👉biorxiv.org/content/10.1101/…
@avweigel @BogovicJohn @korfffly @preibischs @MountainRhoades @yurii_zubov
CellMap Project Team retweeted
Excited to announce the release of our DaCapo paper!
@MountainRhoades @janfunkey @cmalinmayor @diane_adjavon @neptunes5thmoon @yurii_zubov
👇🏼Check it out! 👇🏼
DaCapo paper is out!
DaCapo is a specialized deep learning library designed to accelerate the training and application of machine learning techniques on large, near-isotropic image data.
arxiv.org/abs/2408.02834
#MachineLearning #DeepLearning #Segmentation #OpenSource #DaCapo
CellMap Project Team retweeted
Check out the ✨NEW✨ content on OpenOrganelle!
Update includes:
📰A News page
🦠An updated Organelles page
🔍A new backend for dataset metadata which is now stored in a queryable PostgreSQL database
openorganelle.janelia.org
ALT Screen shot of new home page featuring News reel and latest datasets
ALT Screenshot of News and Announcements page including thumbnails of each blog post
ALT Screenshot of newly updated Organelles page. A thumbnail gallery of EM images for organelles such as centrosomes, mitochondria, nucleus, etc.
CellMap Project Team retweeted
Super cool rendering 😍 by @philiphubbard up on Janelia's YouTube channel: youtu.be/3hVHbIRS48Q
CellMap Project Team retweeted
And another gorgeous rendering 🤩 by @philiphubbard : youtu.be/hfHO2DjpJSE
CellMap Project Team retweeted
Ever wanted to learn how to segment organelles in vEM? Or how we (@COSEMdata/@CellMapPT) generate training data for ML efforts? Look no further! You can find it all here in our recent protocol protocols.io/view/amira-anno… #teamscience #projectteams #openscience
ALT organelle segmentation