Roswell Park Cancer Institute
Joined November 2011
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Bioconductor retweeted
Watch R/Bioconductor Conference 2023 with @RLadiesRome 🔥
RSVP: meetup.com/rladies-rome/even…
When: August 28, 2023 at 4:00 PM CET / 10:00 AM EDT
Where: in Rome (more info in the link)
#rladies #rstats @Bioconductor @RLadiesGlobal
#biostatistics #Bioinformatics
Bioconductor retweeted
And we round out the last (but not least) @Bioconductor keynote this year with the powerhouse @NancyZh60672287 presenting on modeling #cancer #genomics data with #singlecell and #spatial #transcriptomics data! 🧬
#BioC2023 #epigenetics #images #tumor #heterogeneity #Visium
Bioconductor retweeted
Continuing with the #imaging theme, our next @Bioconductor keynote presentation is from Jeff Moffitt on understanding the host #microbiome with #MERFISH 🔬
#Bioc2023 #SingleCell #Spatial
Bioconductor retweeted
Beth Cimini @BoSoxBioBeth #BioC2023 keynote today at 8:30 ⏰
🔬 -> 🔢 -> 💻 -> ⚕️
xitter.cf/Bioconductor/status/16…
**BioC2023 Keynote Speaker**
Beth Cimini
Twitter: @BoSoxBioBeth
Her keynote speech will be on making the most of your microscopy with high content analysis.
BioC2023 Schedule: buff.ly/3O1mjVq
Virtual Registration for BioC2023: buff.ly/3nKEq72
ALT Keynote Speaker - Beth Cimini - Senior Group Leader, Broad Institute of MIT and Harvard
Bioconductor retweeted
Vince Carey thanks the #bioc2023 @bioconductor sponsors at the meeting opening. @moderna_tx @OzetteTech @Microsoft @RConsortium @Novartis @posit_pbc @bluebirdbio @bmsnews
Bioconductor retweeted
We're thrilled to host @bioconductor & #bioc2023 on Aug 2-4 in #Boston!
Early registration through May 31: bioc2023.bioconductor.org/re…
Scholarships available, apply: app.smartsheet.com/b/form/44…
hopin.com/events/bioc2023
Bioconductor retweeted
Suggest @Bioconductor award by May 31 to honor contributions to the project bioconductor.org/about/award…
Bioconductor retweeted
This work by Shila @shazanfar, @TheEllisPatrick et al looks great!!! 💯
I don’t have molecular data right now, but whenever I do, knowing that this package 📦 exists gives me peace of mind knowing that I’ll be able to easily store & manipulate the data
#rstats @Bioconductor – at Hackney, London
Excited to share the first preprint from my lab 🎉
In close collaboration with @TheEllisPatrick we share MoleculeExperiment - R/Bioconductor class for molecule-resolved spatial transcriptomics
Congratulations to Bárbara Zita Peters Couto for her work on this exciting project!
Bioconductor retweeted
Robert Gentleman developed R & @Bioconductor
@Bioconductor was written soon after R was released but had a number of differences
- packages require a vignette (tutorial)
- Use of S4 rather than S3 classes
- Interoperable ecosystem with daily builds & checks of packages
#rstats
Found this really nice timeline about the history of #rstats.
It is very interesting how #bioconductor is created just one year after the stable version of R.
And RStudio first release happens only in 2011, 4 years after Hadley's ggplot2!
Source: mdpi.com/1606768
Bioconductor retweeted
Excited to be presenting today at the @UCLchildhealth @GGM_ICH @G_T_Hall Computational Biology Club! 👩💻 🧬
I will be sharing tools we have developed @LieberInstitute for analysing spatial data in the #spatialLIBD @Bioconductor package 🧠
slides here: speakerdeck.com/lahuuki/thin…
Bioconductor retweeted
Great to see these two communities (@scverse_team @Bioconductor) working on bridges between their software. Helping users get things done ✅
Reminder: scverse community meeting about Genomic Ranges support tomorrow.
We start with a short intro to the BiocPy GenomicRanges implementation by @jayaram.
more details: hackmd.io/VfVLKb3ETGKN2j_7tn…
Bioconductor retweeted
Register for the free SITC-@theNCI Comp IO 2023 webinar series. Led by experts in the field, this 8 webinar series will help individual research labs embrace the computational challenges of analyzing and integrating diverse data across the spectrum of IO. sitcancer.org/CompIO
Bioconductor retweeted
Still a few days left to submit your abstract to #EuroBioC2023 ..
📣 Abstract submission is open for #EuroBioC2023 conference in Ghent 🇧🇪 Sep 20-22 eurobioc2023.bioconductor.or… !
Submit an abstract by April 14 for
Short talk
Software demo
Poster
Contributed session
BOF session
👉 Submit here openreview.net/group?id=bioc…
#rstats #Bioinformatics
ALT A screenshot of the EuroBioc2023 website showing the conference dates and hex sticker.
Bioconductor retweeted
#biocthis version 1.9.3 now supports this change by default
#rstats @Bioconductor @github
lcolladotor.github.io/biocth…
🚨📢 On March 8th, the Bioconductor Core Team will rename the default branch on `git.bioconductor.org` from `master` to `devel`.
For more details, see the
1. Blog post bioconductor.github.io/biocb…
2. Branch Rename FAQ
contributions.bioconductor.o…
ALT Screenshot of blog post on the renaming of Bioconductor default branch from master to devel
Bioconductor retweeted
BioC Asia 2022 presentations are now available for viewing on YouTube: youtube.com/playlist?list=PL…
@Bioconductor #rstats
Bioconductor retweeted
Proud to be part of Bioconductor Carpentries global training program! Thank you @Bioconductor for giving me the opportunity to be part of the program!
✍️ New blog post - An update on the Bioconductor Carpentries global training program - applicants selected for Year 1 🎉 🎓
bioconductor.github.io/biocb…
#rstats #bioinformatics @R_Contributors @_R_Foundation @thecarpentries @cziscience
Bioconductor retweeted
An amazing tutorial by @jokergoo_gu on how to visualise complex heatmaps interactively in #Rstats @Bioconductor
#Genomics #Bioinformatics #Rstats #DataScience #Datavisualization
bioconductor.org/packages/de…
Bioconductor retweeted
@Github actions and @Bioconductor
## Create a GitHub Actions (GHA) workflow that is Bioconductor-friendly
biocthis::use_bioc_github_action()
See more at github.com/r-lib/actions/blo…
