Bioinformatics Lab - Department of Computer Science - University of Freiburg - https://xitter.cf/t.co/OQBOIU7FDe
Freiburg im Breisgau, Germany
Joined January 2017
- Tweets243
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backofenlab retweeted
Day #2 of the #DFG SPP2002 conference in Kiel. 🙂This morning @Lydia_LH17 from our group will present our joint Z-project with @BackofenLab on ribosome profiling and bioinformatics approaches for global sORF identification.
Looking forward to our @SPP__2002 conference (@dfg_public) on small proteins in prokaryotes starting tomorrow in Kiel: Opening lecture by the @storzlab tomorrow evening & many talks on new insights in small proteins in bacteria & archaea & their function in the upcoming days.
backofenlab retweeted
We're delighted to share our new work on CRISPR-Cas. CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems academic.oup.com/nar/advance…
backofenlab retweeted
Exciting news, our preprint about predicting #ORF in bacteria from #Ribo-seq data is available. Great collab: @realgelhausr, @SarahLSvensson, @amri2k, @SharmaLab1, @eggtron, @BackofenLab
biorxiv.org/content/10.1101/…
github.com/RickGelhausen/Rib…
#proteins #benchmark #Bioinformatics #SPP2002
backofenlab retweeted
A new #usegalaxy tool suite from @BackofenLab for chimeric RNAs associated with specific cancer types. ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data doi.org/10.1093/gigascience/…
backofenlab retweeted
And thanks to the organizers! First and foremost @hexylena and @shiltemann! What a great event!
A long week and it's sadly coming to an end. We're so happy for the (now 1177 people🤯) who registered and those who joined this week! Thank you to @CinecaProject @ErasmusplusNL @gxytraining @galaxyproject, and all the amazing GTN instructors who supported this #UseGalaxy event!
backofenlab retweeted
@denbiOffice and RBC Freiburg @BackofenLab will also support the next @galaxyproject Papercuts CoFest #usegalaxy #Bioinformatics. For more information see: denbi.de/training/1194-the-f…
backofenlab retweeted
We welcome our 1080 registered trainees! Don't hesitate to ask any of the 50+ trainers from all over the world.
galaxyproject.eu/posts/2021/…
@ELIXIREurope @EoscLife #denbi @UniFreiburg @Gallantries_EU
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backofenlab retweeted
🦠Don't miss out on the next #COVID19 Galaxy webinar with @bjoerngruening @babi2305 and Wolfgang Maier
With them, you will explore the Viral Beacon and Galaxy variant workflows
➡️bit.ly/GalaxyCOVID19
@CRGenomica @galaxyproject @denbiOffice @usegalaxyp #usegalaxy @UniFreiburg
backofenlab retweeted
To all biologists: what are your favourite online conferences you will attend this year?
backofenlab retweeted
Today @sergeilkp will talk about "Insights from selection analysis of complete genomes and read-level data". Join us and learn more about the genetics of #SARSCoV2.
@ELIXIREurope #denbi #usegalaxy
🚨 Haven't you attended yet one of your Galaxy-#COVID19 webinars this year? Now it's time to. We are ready for session 4 with Sergei Pond, tomorrow at 5 pm CET!
Are you coming? ➡️ bit.ly/galaxycovid_4
#bioinforamtics #ELIXIRvsCOVID19 #usegalaxy
backofenlab retweeted
We're very happy to share our new work on CRISPR-Cas. CRISPRidentify: identification of CRISPR arrays using machine learning approach. academic.oup.com/nar/advance… A data-driven approach that uses ML to detect and differentiate true arrays from false ones based on several features.
backofenlab retweeted
We're pleased to share our new work on CRISPR-Cas.Casboundary: Automated definition of integral Cas cassettes academic.oup.com/bioinformat… the first method for automated cassette boundary detection, Cas protein annotation and classification, which comprise single and multi-modules.
backofenlab retweeted
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy. Our work on bridging @nanopore and @galaxyproject, the two accessibility heavens of sequencing & data analysis, is now published: doi.org/10.1093/gigascience/… @WanderingWim @shiltemann @bjoerngruening @mariusvdbeek
backofenlab retweeted
Our tool is online now. You are welcome to try it. Please tell us what do you think about it and also we would appreciate seeing your feedback to improve the tool.
CRISPRIdentify: Identification of CRISPR arrays using machine learning approach biorxiv.org/cgi/content/shor… #bioRxiv
backofenlab retweeted
We're pleased to share our new work on CRISPR-Cas. The CRISPRcasIdentifier clearly outperforms all other available tools on the most recent and comprehensive CRISPR-Cas classification dataset(F-score of 0.91) academic.oup.com/gigascience…
backofenlab retweeted
@ProjectJupyter notebooks running in #usegalaxy and analysing the result of the 3k+ #SARSCoV2 workflow. @rstudio is also available of course :)
Thanks @nekrut for presenting and @DBlankenberg for his awesome work in Interactive Tools.
backofenlab retweeted
The #usegalaxy project is collecting __all__ publically available #SARSCoV2 datasets, automatically, daily and in a trasparent. @github CI is then scheduling workflows on Galaxy servers. Every day new histories with new data! Available for everyone. #OpenData #openscience
backofenlab retweeted
Just a quick reminder! Today is our second joint webinar between @galaxyproject & @ELIXIREurope. @nekrut and Wolgang Maier are talking about SARS-Cov-2 Genomics and Variant Calling.
More information: elixir-europe.org/events/web…
Project website: covid19.galaxyproject.org
backofenlab retweeted
While manual annotation is still the gold standard for annotated genomic data, our tool is the first automatic tool that can effectively be used to investigate the diversity of CRISPR subtypes in e.g. uncultured organisms or in metagenomic data.