@ArthurGilly
arthurgilly.eu
Joined October 2016
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Arthur Gilly retweeted
V@vsoch10 Nov 2020
Woohoo!
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Interested in data analysis, bioinformatics and machine learning in genomics? We have a new Genomics Data Scientist role opening up in our team. Apply here: jobs.helmholtz-muenchen.de/j…
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Not much of a Linux fan (tbh installing Linux as a main OS is debatable with WSL/MacOS) but I recently stumbled upon Zorin OS. If you were put off by the ugliness of literally all common distributions, Zorin OS might be for you. It actually looks like it comes from this decade!
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First foray into spatial data analysis! Thanks @kbrauneder for explaining all these concepts to me. arthurgilly.eu/work/GIS.html
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A first deep whole genome sequence-based look at 257 circulating protein biomarkers: novel common and rare variant pQTLs, polygenic risk score prediction and causal links to disease. All in a day’s work for @ArthurGilly :)
Clint Miller@clintomics27 Nov 2019
Whole genome sequencing analysis of the cardiometabolic proteome biorxiv.org/content/10.1101/… @EleZeggini

Whole genome sequencing analysis of the cardiometabolic proteome

The human proteome is a crucial intermediate between complex diseases and their genetic and environmental components, and an important source of drug development targets and biomarkers. Here, we...

biorxiv.org
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Over the Christmas period I've been experimenting with containerised server deployment for the bioinformatics lab. Details here arthurgilly.eu/work/serverco…. Thanks to @vsoch for an interesting discussion on user auth & mapping.
To all fellow bioinformaticians and analysts out there, a position is opening in our institute! This is a pivotal omics/sequencing support role, with opportunities for method development and more focused project work. bms.candibase.de/atool/helmh… #sequencing #bigdata #bioinformatics
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for those to whom the words "cloud hosting" are anathema : github.com/Kickball/awesome-…
Arthur Gilly retweeted
Morgan
@Nag_FR22 Dec 2018
When your kid asks for a switch for Christmas
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Population-wide copy number variation calling using variant call format files from 6,898 individuals biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits - new article from @EleZeggini and @ArthurGilly now online at @NatureComms nature.com/articles/s41467-0…
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A universal SNP and small-indel variant caller using deep neural networks go.nature.com/2NBuDgX #machinelearning
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A one penny imputed genome from next generation reference panels biorxiv.org/content/early/20…
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Arthur Gilly retweeted
bioRxiv@biorxivpreprint11 Aug 2018
Large-scale whole-genome sequencing of three diverse Asian populations in Singapore biorxiv.org/cgi/content/shor… #bioRxiv
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Arthur Gilly retweeted
Danielle@DPosthu31 Jan 2018
Our latest on @biorxivpreprint 1.3M GWAS for insomnia - terrific job @phi_jan, with the #CTGlab team, @23andMeResearch and others! bit.ly/2Er4pGa
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Congratulations and big thanks to @VirginAtlantic for an admirably managed situation with flight #VS15 to Orlando!
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Very apt warning on the GATK website: "don't open VCFs in Word."
Posthuma introduces FUMA, a tool for fxnl annotation of #GWAS summary stat data fuma.ctglab.nl #neurogen17
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