Science nerd. Interested in #MultiOmics and #PersonalisedMedicine. Senior Bioinformatician and PhD student at @CRUK_CI.
Cambridge, England
Joined June 2020
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Excellent work @thekevintu, glad to see it out :)
๐งตMy poor laptop wishes I learned how to use the cluster earlier, but itโs sacrifice was not in vain! We learned some important things about the breast cancer tumor microenvironment in our paper published today:
cell.com/cell-reports-mediciโฆ
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
stuck with R for RNAseq analysis because DESeq2 and tximport are in R? now we have: Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python academic.oup.com/bioinformatโฆ
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
I am still amazed about receiving this email, which has now happened for the 7th year in a row! #HighlyCited2024
A big shout for all members of @caldaslab, this is for you! Also thanks to @ClarivateAG!
Happy to have contributed to this piece of work. Huge effort, specially from the amazing @Abigail_Shea1 ๐๐๐ and great tweetorial from @DannGuerreroR
Thrilled to share that our paper is out!๐ขThis marks my first co-second (wth @y_lubling) authorship collab during my PhDโcouldn't be prouder of our team's work "Modeling TNBC drug responses with patient-derived xenografts opens doors to precision medicine strategies" @CR_AACR 1/n
If you are looking for a high impact PhD in cancer research donโt miss out. Stephen is a brilliant scientist who deeply cares about patients and doing science right.
How does immune failure enable metastasis and evolution in breast cancer?
Join us for a computational #singlecell #PhD @ICR_London.
Learn more and apply: icr.ac.uk/studying-and-trainโฆ
#CancerResearch #Bioinformatics #AcademicTwitter
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
Weโre looking for a motivated PhD student to join our team at VHIO for an exciting computational immuno-oncology project. Want to be part of our young, dynamic team? Check out the position and apply! ๐ป๐งฌ #PhD #CompImmunoGenomics vhio.net/vhio-phd-opportunitโฆ
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
LinkedIn is now using everyone's content to train their AI tool -- they just auto opted everyone in.
I recommend opting out now (AND that orgs put an end to auto opt-in, it's not cool)
Opt out steps: Settings and Privacy > Data Privacy > Data for Generative AI Improvement (OFF)
Very excited about this upcoming course at the @BioInfoCambs. Interested in stepping up your bioinformatics analytical skills? Want to make your code reproducible and scalable? There are some spots left on the 24th Sept! Do not miss out ๐ training.cam.ac.uk/bioinformโฆ
I can finally say that I am an official Nextflow ambassador! I feel that I have been one for a while (as my laptop stickers prove) but it was nice to get confirmation. Thanks @nf_core and @nextflowio. Looking forward to keep helping with training and new projects!
Great to see this finally published! Very well done @camyoung54, it was a pleasure to work with you :)
Excited to share my work from @CRUK_CI has been published! Thanks to my incredible mentors @OMRueda and @CarlosC24501217 for supporting this journey and helping me have the most amazing experience in the UK!
@CaldasLab #breastcancer
I mean, what else to say? Another amazing paper from the super star @stephensammut. Excellent work my friend :)
๐ Breast cancer immunology paper out in @NatImmunolโผ๏ธโ ๏ธ
Buckle up for a deep dive into how our immune system fights breast cancer! ๐ฅท๐ช๐ป
Link to paper: rdcu.be/dGy70
#cancerresearch #bcsm #breastcancer
Main messages, a ๐งต: ๐๐ป @OncoAlert
Very well done @thekevintu!
Well done @thekevintu for a comprehensive talk on the clinical implications of tumour microenvironment features with a meta-dataset of 15,000 breast tumors in @EACRnews Cancer Genomics!
#bcsm
Very proud of you @stephensammut , very pleased to see your hard work recognised ๐๐ป๐๐ป
๐๐ Congratulations to Dr Stephen-John Sammut (@stephensammut) who has won the prestigious Graham Bull Prize from the @RCPhysicians!
The prize is in recognition of his work in personalised #BreastCancer medicine.
Find out more ๐
icr.ac.uk/news-archive/icr-rโฆ
ALT Dr Stephen-John Sammut
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
#JOB CALL!! #bioinformatician #PipelineDeveloper
Help us build #pipelines for #ecologists #evolutionary #biologists #agriculture #scientists. @UCL @QMUL @BBSRC #BBR
t.ly/Kny9r
#nextflow #workflows #sciencejobs #biotech #omics
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
๐ฃ๏ธ Mark your calendars!
๐งฌ The international lecture series on chromosomal instability is coming to you soon.
๐ค Starting with superstar speaker @skimomiks
๐ฅ May 17 on zoom.
If you fancy hearing me out about RNA-seq and how to identify mutations do not miss out ๐
Only few places left!
๐ง Next Cam Comp Onco meeting
โฒ๏ธ March 15th, 3-6 pm
๐ hosted by AZ at the DISC
๐ข @OMRueda @AppleTreeWoman @RedaKeddar
โ๏ธโ๏ธRegister by march 10thโ๏ธโ๏ธ
forms.office.com/e/iRW1Eak3tโฆ
Raquel Manzano ๐งฌ๐ช๐บ๐ช๐ธ retweeted
heard UMAP was popular on twitter, anyone have any advice on how to tighten up the clusters?
It was a pleasure to talk to @VdaGeraldine and really enjoyed the hackathon and summit. Feeling lucky to be part of this awesome community! @nf_core #Nextflow
๐๏ธ Ep.26 of the @nextflowio #Channels #podcast - @VdaGeraldine talks to Raquel Manzano, Edmund Miller, Rieke Hanssen and Francesco Lescai at the 2023 @nf_core hackathon about their work, #Nextflow and the importance of community. xitter.cf/i/broadcasts/1mnxepbDXโฆ