Professor @TampereUniMET: Studies #GeneNetworks #SingleCell & #Biophysics #Bacteria focusing on #AntibioticTolerance and #StressResponse
Tampere, Finland
Joined February 2020
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How do bacterial operons respond to genome-wide stress? In our new @ScienceAdvances paper, we show that it is all about internal promoters and premature terminations! A key mechanism, shared by many species. 📄+ 💻 + 🧪 = doi.org/10.1126/sciadv.adl35….
New paper in @PLOSCompBiol! We found natural #Ecoli genes with #bimodal dynamics at the #singlecell level. We propose a model, study their robustness to stresses, and share lots of data for future works. These genes might have many applications. doi.org/10.1371/journal.pcbi…. 🥳
Andre Ribeiro's Lab retweeted
Promoter spacing:
Ribeiro and colleagues @TampereUniMET study the transcriptional interference of engineered promoters in nonoverlapping, tandem formations, finding attenuation depends on multiple factors.
pubs.acs.org/doi/10.1021/acs…
#syntheticbiology
#transcription
Andre Ribeiro's Lab retweeted
New issue! 📣
Learn about copper chaperones, target determination, IR for protein structure & more.
pubs.acs.org/toc/bichaw/63/1…
Cover art: Chauhan et al @TampereUniMET study engineered promoter spacing, finding attenuation depends on multiple factors.
pubs.acs.org/doi/10.1021/acs…
And now, for something completely new to the LBD, we have contributed with the cover for a number of @BiochemistryACS: pubs.acs.org/toc/bichaw/63/1…. 🥳👩🎨🧑🎨🎨.
We are happy!🙂🕵️♀️! to share our new paper in @BiochemistryACS on transcription attenuation 🧬#ecoli in tandem promoters due to RNAP collisions and fall-offs: pubs.acs.org/doi/full/10.102…. Genetic constructs will be available in #AddGene! #GeneExpression #TranscriptionFactor #Biorender
We are happy🙂to share our library of reporters of global regulators of gene expression 🧬#ecoli published in #mSystems and (soon available in #AddGene)! We hope it is useful 🔬 doi.org/10.1128/msystems.000…. doi.org/10.5061/dryad.b2rbnz….
#Biorender #GeneExpression #TranscriptionFactor
📷
Andre Ribeiro's Lab retweeted
Abstract deadline: July 30... waiting for your latest stories!
Single Molecule Bacteriology III September 30 - October 3rd, 2024 in UK!
Register here: eventsforce.net/biochemsoc/f…
We are happy to inform that we completed and shared our work "A library of reporters of the global regulators of gene expression of Escherichia coli" biorxiv.org/content/10.1101/… . Hopefully, it will be useful to many. 🙂🧬🔬
Andre Ribeiro's Lab retweeted
Only one more week to apply to @ERC_Research funded PhD and postdoc positions in our #TEMPADAPT project. More info:
tinyurl.com/2zy95b5z
tinyurl.com/3z6bja2x
tinyurl.com/mpmwj5y4
We have just opened a position for a new Ph.D. student: tuni.rekrytointi.com/paikat/…. Please apply if you like our project! 🎓🔬🦠🧬🙂
!We are very grateful to @SigridJuselius for a 3-years grant! Thank you! We will study transcriptional programs that evolved in bacteria 🦠 to increase their antibiotics tolerance💊.😀
Andre Ribeiro's Lab retweeted
Happy to share that I’m starting a new position as Research Assistant Professor at #bostonuniversity!
Excited to begin building my research group at the @BU_ece focusing on engineering microfluidic chips to study synthetic microbial communities. #research #syntheticbiology
We have published a new video, presenting our recent work on the influence that the topology and logic of the transcription factor network of E. coli has on the global transcriptional programs responsive to shifts in media richness! 🔬🧬🦠(youtu.be/y9xCNG6B2Hs).
Happy to announce the PhD defense🎓of my student M Bahrudeen. He studied genome wide🧬effects of local DNA features on #SingleCell🔬single gene expression in #Ecoli🦠. The defense will be transmitted online. #supercoil #TandemPromoter🥳
@TampereUniMET
tuni.fi/en/news/mohamed-bahr…
We have published (in our laboratory's YouTube channel) a short video describing one of our recent works on the role of sigma factors in gene expression regulation! 📽️🤓(youtube.com/watch?v=NLVmPHD7…)
Andre Ribeiro's Lab retweeted
📢 JOB ALERT! 📢
We have @ERC_Research funded PhD and postdoc positions available to work on our #TEMPADAPT project. More info:
tinyurl.com/d4p4ey2n
tinyurl.com/k38c5yah
Please RT.
I am humbled and excited to share that my ERC Starting Grant project #TEMPADAPT has been funded! We will study how bacteria adapt to extreme temperatures from 0°C to 100°C using #SuperResolution #singlemolecule tracking @ERC_Research @BIOTECH_UH @HiLIFE_Helsinki @helsinkiuni
Andre Ribeiro's Lab retweeted
I am humbled and excited to share that my ERC Starting Grant project #TEMPADAPT has been funded! We will study how bacteria adapt to extreme temperatures from 0°C to 100°C using #SuperResolution #singlemolecule tracking @ERC_Research @BIOTECH_UH @HiLIFE_Helsinki @helsinkiuni
📢 The ERC's 2022 Starting Grant competition results are now revealed. Over €636 million to fund the best ideas of younger scientists.
Find out who, where and why 👉 bit.ly/3JRyDDg
🇪🇺#EUfunded @HorizonEU #FrontierResearch #ERCStG
A small being 🦠that was a giant step in evolution! 17.9 is the #InternationalMicroorganismDay. To celebrate, we partnered with @SPMicrobiologia to host a virtual tour of our lab (10AM GMT+1). See how we study bacteria. 👨🔬 🔬🧬🧪 sites.google.com/view/andrer… @IntMicroDay
Andre Ribeiro's Lab retweeted
Glad to share our latest publication, where @DouglasDensmore and I share our vision about a hardware, wetware, and software co-design environment for the forward engineer of #Microfluidics chips carrying #Synthetic communities to solve real-life problems.
spj.sciencemag.org/journals/…
