PhD student @lievenClement and @elfridedebaere lab, Developing statistical software for transcriptomics analysis, Ghent University
Ghent
Joined June 2021
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Fast differential usage, aberrant splicing and expression analysis that scales to large RNA-seq data compendia? Check out our preprint to see how juggling offsets unlocks bulk RNA-seq tools for these applications. Great collaboration with @lievenclement and @elfridedebaere lab!
Juggling offsets unlocks RNA-seq tools for fast scalable differential usage, aberrant splicing and expression analyses. biorxiv.org/cgi/content/shor… #bioRxiv
Alexandre Segers retweeted
Also, regarding this new preprint on differential splicing / transcript usage, see @Alex_Segers_'s helpful answer on @jeremy_m_simon's Bioconductor support site post:
support.bioconductor.org/p/9…
xitter.cf/Alex_Segers_/status/16…
Fast differential usage, aberrant splicing and expression analysis that scales to large RNA-seq data compendia? Check out our preprint to see how juggling offsets unlocks bulk RNA-seq tools for these applications. Great collaboration with @lievenclement and @elfridedebaere lab!
Alexandre Segers retweeted
saseR dramatically 💫 boosts the performance for aberrant splicing. Work from @Alex_Segers_ & @lievenClement, great collab with @GilisJeroen @mvheetve @elfridedebaere @RAREMED1 @ResearchUGent @FWOvlaanderen
#RNAseq #diagnosis #raredisease #splicing #expression #differentialusage
Alexandre Segers retweeted
📢 Important & cool paper alert! 📢 saseR is a Scalable Aberrant Splicing and Expression Retrieval framework that outperforms existing tools (e.g. DEXSeq, OUTRIDER, OutSingle, FRASER) in terms of computational speed and scalability 👇
Fast differential usage, aberrant splicing and expression analysis that scales to large RNA-seq data compendia? Check out our preprint to see how juggling offsets unlocks bulk RNA-seq tools for these applications. Great collaboration with @lievenclement and @elfridedebaere lab!
And last but not least, we also show that using saseR improves power significantly to detect aberrant splicing events.
Alexandre Segers retweeted
Fast differential usage, aberrant splicing and expression analysis that scales to large RNA-seq data compendia? Check @Alex_Segers_ preprint to see how juggling offsets unlocks bulk RNA-seq tools for these applications. Great collaboration with @elfridedebaere lab and @RAREMED1
Juggling offsets unlocks RNA-seq tools for fast scalable differential usage, aberrant splicing and expression analyses. biorxiv.org/cgi/content/shor… #bioRxiv